RBP group

Regulatory elements

The characteristics of group related REs for putative RBP groups

We defined 18 RBP co-binding groups, the known functions for each RBP groups and de novo motifs were listed for each RBP group. The downloading of binding sites for each group were also supportted

Click to download total binding sites total binding sites

Click to download the original occupancy matrix occupancy matrix

Click to download the results of RBPgroup RBPgroup results

Group Components Support by physical interactions Known funtions de novo motif Download
2 AGO4, CPSF2, ELAVL1, LIN28A, PUM2, QKI, RBPMS, TNRC6A, TNRC6B, TNRC6C 0.3713 unknown
binding sites
3 EWSR1, FUS, LIN28B, TAF15 0.0448 splicing, polyadenylation, transport, translation
motif 1 motif 2 binding sites
4 HNRNPA1, HNRNPA2B1, HNRNPF, HNRNPH1, HNRNPM, HNRNPU 0.0000 pre-mRNA processing and splicing
motif 1 motif 2 binding sites
5 CPSF6, NUDT21 0.0373 3' end cleavage and polyadenylation processing
motif 1 motif 2 binding sites
6 CSTF2T, CSTF2 0.5373 3' end cleavage and polyadenylation processing
motif 1 motif 2 binding sites
7 C17orf85, RTCB 0.5373 oxidative demethylation and export NA

NA

binding sites
9 AGO1, AGO2, AGO3, AGO4, TNRC6A, TNRC6C 0.0000 degradation related
motif 1 motif 2 binding sites
12 FBL, NOP56, NOP58 0.0018 snRNA processing
motif 1 motif 2 binding sites
13 ALKBH5, CPSF1, CPSF2, CPSF3, CPSF4 0.0092 3' end cleavage and polyadenylation processing
motif 1 motif 2 binding sites
15 CPSF6, CPSF7 0.0373 3' end cleavage and polyadenylation processing
motif 1 motif 2 binding sites
16 EWSR1, FXR1, FXR2 0.0119 transport and translation motif 1 binding sites
18 IGF2BP1, IGF2BP2, IGF2BP3 0.6076 transport and translation
motif 1 motif 2 binding sites
The characteristics of group related REs for putative RBP groups

We defined 12 RBP co-binding groups, the known functions for each RBP groups and de novo motifs were listed for each RBP group. The downloading of binding sites for each group were also supportted

Click to download total binding sites total binding sites

Click to download basis matrix basis matrix

Group Components Support by physical interactions Known funtions de novo motif Download
2 AGO4, CPSF2, ELAVL1, LIN28A, PUM2, QKI, RBPMS, TNRC6A, TNRC6B, TNRC6C 0.3713 unknown
binding sites
The characteristics of group related REs for putative RBP groups

We defined 18 RBP co-binding groups, the known functions for each RBP groups and de novo motifs were listed for each RBP group. The downloading of binding sites for each group were also supportted

Click to download total binding sites total binding sites

Click to download basis matrix basis matrix

Group Components Support by physical interactions Known funtions de novo motif Download
2 AGO4, CPSF2, ELAVL1, LIN28A, PUM2, QKI, RBPMS, TNRC6A, TNRC6B, TNRC6C 0.3713 unknown
binding sites

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